Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs3761980 | chr6:35993906 | C/T | 9.4E-10 | 407 | 6.15 | 14.95 | 15.7 | KM Plot |
| LGG | rs3765002 | chr10:64006124 | G/T | 0.000142 | 402 | 12.17 | 15.57 | 15.78 | KM Plot |
| LGG | rs376732583 | chr6:36010674 | TGAGCTCAG/T | 1.0E-9 | 406 | 15.67 | 14.95 | 6.15 | KM Plot |
| LGG | rs3767515 | chr1:201117268 | G/A | 5.92E-5 | 403 | 9.28 | 15.5 | 15.3 | KM Plot |
| LGG | rs3773920 | chr3:100991546 | G/T | 0.000164 | 402 | 15.67 | 14.8 | 11.7 | KM Plot |
| LGG | rs377429254 | chr13:48569547 | TAAC/T | 1.25E-5 | 406 | 15.37 | 15.22 | 4.17 | KM Plot |
| LGG | rs3779412 | chr7:73625128 | T/C | 2.4E-8 | 400 | 15.03 | 20.1 | 3.62 | KM Plot |
| LGG | rs3793544 | chr9:35839541 | C/T | 2.53E-5 | 404 | 4.27 | 19.63 | 14.85 | KM Plot |
| LGG | rs3795151 | chr20:62508021 | T/C | 3.89E-13 | 406 | 15.25 | 16.23 | 5.4 | KM Plot |
| LGG | rs3797577 | chr5:156018364 | C/T | 6.11E-5 | 407 | 11.63 | 14.12 | 16.75 | KM Plot |
| LGG | rs3804451 | chr6:36077961 | G/A | 9.31E-10 | 407 | 15.63 | 15.15 | 6.15 | KM Plot |
| LGG | rs3816089 | chr7:56048737 | C/T | 1.6E-10 | 406 | 15.3 | 16.08 | 7.8 | KM Plot |
| LGG | rs3818435 | chr1:201121225 | T/A | 3.89E-5 | 402 | 9.28 | 15.63 | 15.3 | KM Plot |
| LGG | rs381848 | chr22:18901290 | G/A | 0.000184 | 398 | 10.5 | 16.6 | 15.18 | KM Plot |
| LGG | rs3820425 | chr1:201117946 | T/C | 5.92E-5 | 403 | 9.28 | 15.63 | 15.25 | KM Plot |